PDB Entry (2yme) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2yme | Resolution: 2.4 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23196367 | DOI: 10.1038/embor.2012.189 | |
Protein |
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Protein Name: Soluble acetylcholine receptor | |
Protein Class: SIGNALING PROTEIN | |
Uniprot ID/ACC: Q8WSF8 (Q8WSF8_APLCA) | Organism: Aplysia californica |
Gene Symbol: - | Gene ID: 100533247 |
Pocket Descriptors | |
Volume: 61.184 | Depth: 17.8889 |
Hydrophobicity: 0.791304 | Drug Score: 0.0250612 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 1-methyl-N-[(1R,5S)-9-methyl-9-azabicyclo[3.3.1]nonan-3-yl]indazole-3-carboxamide | ||
HET ID: CWB | PubChem: 5284566 | |
DrugBank: DB00889 | ChEMBL: CHEMBL1290003 | |
Canonical SMILES: CN1[C@@H]2CCC[C@H]1C[C@H](C2)NC(=O)c1nn(c2c1cccc2)C | ||
Standard InChI: InChI=1S/C18H24N4O/c1-21-13-6-5-7-14(21)11-12(10-13)19-18(23)17-15-8-3-4-9-16(15)22(2)20-17/h3-4,8-9,12-14H,5-7,10-11H2,1-2H3,(H,19,23)/t12-,13+,14- | ||
Molecular Formula: C18H24N4O | Mol. Weight: 312.40936 | Heavy Atoms: 23 |
Charge: 0 | Is Chiral: True | logP: 2.6472 |
HBD: 1 | HBA: 5 | TPSA: 50.16 |
#Bonds: 29 | #Rotatable Bonds: 3 | Shape Complexity: 0.5555556 |
Stereocomplexity: 0.16666667 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 22 nM |
Binding MOAD | Kd : 22 nM |