PDB Entry (2ymd)

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Visualizer: MichelaNGLo

PDB ID: 2ymd Resolution: 1.96 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23196367 DOI: 10.1038/embor.2012.189
Protein
Protein Name: Soluble acetylcholine receptor
Protein Class: SIGNALING PROTEIN
Uniprot ID/ACC: Q8WSF8 (Q8WSF8_APLCA) Organism: Aplysia californica
Gene Symbol: - Gene ID: 100533247
Pocket Descriptors
Volume: 73.984 Depth: 15.517
Hydrophobicity: 0.739583 Drug Score: 0.0772371
Pocket Similarity: Calculate
Ligand
Ligand Name:   SEROTONIN
HET ID:   SRO PubChem:   5202
DrugBank:   DB08839 ChEMBL:   CHEMBL39
Canonical SMILES:   NCCc1c[nH]c2c1cc(O)cc2
Standard InChI:   InChI=1S/C10H12N2O/c11-4-3-7-6-12-10-2-1-8(13)5-9(7)10/h1-2,5-6,12-13H,3-4,11H2
Molecular Formula:   C10H12N2O Mol. Weight:   176.21507 Heavy Atoms:   13
Charge:   0 Is Chiral:   False logP:   2.075
HBD:   3 HBA:   2 TPSA:   62.04
#Bonds:   15 #Rotatable Bonds:   2 Shape Complexity:   0.2
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Kd : 693000 nM
Binding MOAD Kd : 693000 nM