PDB Entry (2ymd) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 2ymd | Resolution: 1.96 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23196367 | DOI: 10.1038/embor.2012.189 | |
Protein |
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Protein Name: Soluble acetylcholine receptor | |
Protein Class: SIGNALING PROTEIN | |
Uniprot ID/ACC: Q8WSF8 (Q8WSF8_APLCA) | Organism: Aplysia californica |
Gene Symbol: - | Gene ID: 100533247 |
Pocket Descriptors | |
Volume: 73.984 | Depth: 15.517 |
Hydrophobicity: 0.739583 | Drug Score: 0.0772371 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: SEROTONIN | ||
HET ID: SRO | PubChem: 5202 | |
DrugBank: DB08839 | ChEMBL: CHEMBL39 | |
Canonical SMILES: NCCc1c[nH]c2c1cc(O)cc2 | ||
Standard InChI: InChI=1S/C10H12N2O/c11-4-3-7-6-12-10-2-1-8(13)5-9(7)10/h1-2,5-6,12-13H,3-4,11H2 | ||
Molecular Formula: C10H12N2O | Mol. Weight: 176.21507 | Heavy Atoms: 13 |
Charge: 0 | Is Chiral: False | logP: 2.075 |
HBD: 3 | HBA: 2 | TPSA: 62.04 |
#Bonds: 15 | #Rotatable Bonds: 2 | Shape Complexity: 0.2 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Kd : 693000 nM |
Binding MOAD | Kd : 693000 nM |