PDB Entry (3zdh) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3zdh | Resolution: 2.19 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23256554 | DOI: 10.1021/jm301409f | |
Protein |
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Protein Name: Acetylcholine-binding protein | |
Protein Class: SIGNALING PROTEIN | |
Uniprot ID/ACC: P58154 (ACHP_LYMST) | Organism: Lymnaea stagnalis |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 92.8 | Depth: 12.2222 |
Hydrophobicity: 0.855263 | Drug Score: 0.668148 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: (2R)-N,N-dimethyl-4-(1-methylimidazol-2-yl)oxy-butan-2-amine | ||
HET ID: XRS | PubChem: 70701321 | |
DrugBank: - | ChEMBL: CHEMBL2312565 | |
Canonical SMILES: CN([C@@H](CCOc1nccn1C)C)C | ||
Standard InChI: InChI=1S/C10H19N3O/c1-9(12(2)3)5-8-14-10-11-6-7-13(10)4/h6-7,9H,5,8H2,1-4H3/t9-/m1/s1 | ||
Molecular Formula: C10H19N3O | Mol. Weight: 197.27736 | Heavy Atoms: 14 |
Charge: 0 | Is Chiral: True | logP: 1.1391 |
HBD: 0 | HBA: 4 | TPSA: 30.29 |
#Bonds: 15 | #Rotatable Bonds: 5 | Shape Complexity: 0.7 |
Stereocomplexity: 0.1 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 45 nM |
BindingDB | Ki : 45 nM |
Binding MOAD | Ki : 45 nM |