PDB Entry (3zdh)

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Visualizer: MichelaNGLo

PDB ID: 3zdh Resolution: 2.19 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23256554 DOI: 10.1021/jm301409f
Protein
Protein Name: Acetylcholine-binding protein
Protein Class: SIGNALING PROTEIN
Uniprot ID/ACC: P58154 (ACHP_LYMST) Organism: Lymnaea stagnalis
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 92.8 Depth: 12.2222
Hydrophobicity: 0.855263 Drug Score: 0.668148
Pocket Similarity: Calculate
Ligand
Ligand Name:   (2R)-N,N-dimethyl-4-(1-methylimidazol-2-yl)oxy-butan-2-amine
HET ID:   XRS PubChem:   70701321
DrugBank:   - ChEMBL:   CHEMBL2312565
Canonical SMILES:   CN([C@@H](CCOc1nccn1C)C)C
Standard InChI:   InChI=1S/C10H19N3O/c1-9(12(2)3)5-8-14-10-11-6-7-13(10)4/h6-7,9H,5,8H2,1-4H3/t9-/m1/s1
Molecular Formula:   C10H19N3O Mol. Weight:   197.27736 Heavy Atoms:   14
Charge:   0 Is Chiral:   True logP:   1.1391
HBD:   0 HBA:   4 TPSA:   30.29
#Bonds:   15 #Rotatable Bonds:   5 Shape Complexity:   0.7
Stereocomplexity:   0.1 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 45 nM
BindingDB Ki : 45 nM
Binding MOAD Ki : 45 nM