PDB Entry (3zdg)

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Visualizer: MichelaNGLo

PDB ID: 3zdg Resolution: 2.48 Å Exp. Method: X-RAY DIFFRACTION
PMID: 23256554 DOI: 10.1021/jm301409f
Protein
Protein Name: Acetylcholine-binding protein
Protein Class: SIGNALING PROTEIN
Uniprot ID/ACC: P58154 (ACHP_LYMST) Organism: Lymnaea stagnalis
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 32.128 Depth: 16.1898
Hydrophobicity: 0.813187 Drug Score: 0.0958219
Pocket Similarity: Calculate
Ligand
Ligand Name:   3-(dimethylamino)butyl dimethylcarbamate
HET ID:   XRX PubChem:   9836977
DrugBank:   - ChEMBL:   CHEMBL2312568
Canonical SMILES:   C[C@@H](N(C)C)CCOC(=O)N(C)C
Standard InChI:   InChI=1S/C9H20N2O2/c1-8(10(2)3)6-7-13-9(12)11(4)5/h8H,6-7H2,1-5H3/t8-/m1/s1
Molecular Formula:   C9H20N2O2 Mol. Weight:   188.2673 Heavy Atoms:   13
Charge:   0 Is Chiral:   True logP:   1.0248
HBD:   0 HBA:   4 TPSA:   32.78
#Bonds:   13 #Rotatable Bonds:   6 Shape Complexity:   0.8888889
Stereocomplexity:   0.11111111 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
PDBBind Ki : 79 nM
BindingDB Ki : 79 nM
Binding MOAD Ki : 79 nM