PDB Entry (3zdg) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 3zdg | Resolution: 2.48 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 23256554 | DOI: 10.1021/jm301409f | |
Protein |
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Protein Name: Acetylcholine-binding protein | |
Protein Class: SIGNALING PROTEIN | |
Uniprot ID/ACC: P58154 (ACHP_LYMST) | Organism: Lymnaea stagnalis |
Gene Symbol: - | Gene ID: - |
Pocket Descriptors | |
Volume: 32.128 | Depth: 16.1898 |
Hydrophobicity: 0.813187 | Drug Score: 0.0958219 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: 3-(dimethylamino)butyl dimethylcarbamate | ||
HET ID: XRX | PubChem: 9836977 | |
DrugBank: - | ChEMBL: CHEMBL2312568 | |
Canonical SMILES: C[C@@H](N(C)C)CCOC(=O)N(C)C | ||
Standard InChI: InChI=1S/C9H20N2O2/c1-8(10(2)3)6-7-13-9(12)11(4)5/h8H,6-7H2,1-5H3/t8-/m1/s1 | ||
Molecular Formula: C9H20N2O2 | Mol. Weight: 188.2673 | Heavy Atoms: 13 |
Charge: 0 | Is Chiral: True | logP: 1.0248 |
HBD: 0 | HBA: 4 | TPSA: 32.78 |
#Bonds: 13 | #Rotatable Bonds: 6 | Shape Complexity: 0.8888889 |
Stereocomplexity: 0.11111111 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
PDBBind | Ki : 79 nM |
BindingDB | Ki : 79 nM |
Binding MOAD | Ki : 79 nM |