PDB Entry (4um1)

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Visualizer: MichelaNGLo

PDB ID: 4um1 Resolution: 2.83 Å Exp. Method: X-RAY DIFFRACTION
PMID: 26180047 DOI: 10.1124/mol.115.098061
Protein
Protein Name: Acetylcholine-binding protein
Protein Class: SIGNALING PROTEIN
Uniprot ID/ACC: P58154 (ACHP_LYMST) Organism: Lymnaea stagnalis
Gene Symbol: - Gene ID: -
Pocket Descriptors
Volume: 260.288 Depth: 12.7257
Hydrophobicity: 0.770492 Drug Score: 0.439603
Pocket Similarity: Calculate
Ligand
Ligand Name:   1-(5-ethoxypyridin-3-yl)-1,4-diazepane
HET ID:   09P PubChem:   22053540
DrugBank:   - ChEMBL:   -
Canonical SMILES:   CCOc1cncc(c1)N1CCNCCC1
Standard InChI:   InChI=1S/C12H19N3O/c1-2-16-12-8-11(9-14-10-12)15-6-3-4-13-5-7-15/h8-10,13H,2-7H2,1H3
Molecular Formula:   C12H19N3O Mol. Weight:   221.29877 Heavy Atoms:   16
Charge:   0 Is Chiral:   False logP:   1.6738
HBD:   1 HBA:   4 TPSA:   37.39
#Bonds:   17 #Rotatable Bonds:   3 Shape Complexity:   0.5833333
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
Database Name Value
BindingDB Ki : 2.200000047683716 nM