PDB Entry (5cfb) Download |
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Visualizer: MichelaNGLo |
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PDB ID: 5cfb | Resolution: 3.04 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 26416729 | DOI: 10.1038/nature14972 | |
Protein |
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Protein Name: Glycine receptor subunit alpha-3 | |
Protein Class: SIGNALING PROTEIN | |
Uniprot ID/ACC: O75311 (GLRA3_HUMAN) | Organism: Homo sapiens |
Gene Symbol: GLRA3 | Gene ID: 8001 |
Pocket Descriptors | |
Volume: 92.096 | Depth: 16.798 |
Hydrophobicity: 0.759494 | Drug Score: 0.0737368 |
Pocket Similarity: Calculate |
Ligand |
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Ligand Name: STRYCHNINE | ||
HET ID: SY9 | PubChem: 441071 | |
DrugBank: - | ChEMBL: CHEMBL227934 | |
Canonical SMILES: O=C1C[C@@H]2OCC=C3[C@H]4[C@@H]2[C@@H]2N1c1ccccc1[C@]12CCN([C@H]1C4)C3 | ||
Standard InChI: InChI=1S/C21H22N2O2/c24-18-10-16-19-13-9-17-21(6-7-22(17)11-12(13)5-8-25-16)14-3-1-2-4-15(14)23(18)20(19)21/h1-5,13,16-17,19-20H,6-11H2/t13-,16-,17-,19-,20-,21+/m0/s1 | ||
Molecular Formula: C21H22N2O2 | Mol. Weight: 334.4116 | Heavy Atoms: 25 |
Charge: 0 | Is Chiral: True | logP: 2.0954 |
HBD: 0 | HBA: 4 | TPSA: 32.78 |
#Bonds: 36 | #Rotatable Bonds: 0 | Shape Complexity: 0.5714286 |
Stereocomplexity: 0.33333334 | Ligand Type: Small Molecule |
Binding Affinity |
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Database Name | Value |
BindingDB | Ki : 12 nM, Ki : 23 nM, Ki : 180 nM, IC50 : 182 nM, IC50 : 93 nM, IC50 : 58 nM, IC50 : 51 nM |