PDB Entry (6wdx) Download |
||
Visualizer: MichelaNGLo |
||
PDB ID: 6wdx | Resolution: 2.65 Å | Exp. Method: X-RAY DIFFRACTION |
PMID: 32659072 | DOI: 10.1021/acschembio.0c00362 | |
Protein |
|
Protein Name: Polyamine deacetylase HDAC10 | |
Protein Class: HYDROLASE | |
Uniprot ID/ACC: F1QCV2 (HDA10_DANRE) | Organism: Danio rerio |
Gene Symbol: hdac10 | Gene ID: 327253 |
Pocket Descriptors | |
Volume: 212.352 | Depth: 14.191 |
Hydrophobicity: 0.717949 | Drug Score: 0.282457 |
Pocket Similarity: Calculate |
Ligand |
||
Ligand Name: N-hydroxy-4-{[3-(2-hydroxyethyl)-1H-indol-1-yl]methyl}benzamide | ||
HET ID: TWS | PubChem: 146676960 | |
DrugBank: - | ChEMBL: - | |
Canonical SMILES: OCCc1cn(c2c1cccc2)Cc1ccc(cc1)C(=O)NO | ||
Standard InChI: InChI=1S/C18H18N2O3/c21-10-9-15-12-20(17-4-2-1-3-16(15)17)11-13-5-7-14(8-6-13)18(22)19-23/h1-8,12,21,23H,9-11H2,(H,19,22) | ||
Molecular Formula: C18H18N2O3 | Mol. Weight: 310.3471 | Heavy Atoms: 23 |
Charge: 0 | Is Chiral: False | logP: 2.7343 |
HBD: 3 | HBA: 5 | TPSA: 74.49 |
#Bonds: 25 | #Rotatable Bonds: 6 | Shape Complexity: 0.16666667 |
Stereocomplexity: 0.0 | Ligand Type: Small Molecule |
Binding Affinity |
||
- |