PDB Entry (6wdx)

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Visualizer: MichelaNGLo

PDB ID: 6wdx Resolution: 2.65 Å Exp. Method: X-RAY DIFFRACTION
PMID: 32659072 DOI: 10.1021/acschembio.0c00362
Protein
Protein Name: Polyamine deacetylase HDAC10
Protein Class: HYDROLASE
Uniprot ID/ACC: F1QCV2 (HDA10_DANRE) Organism: Danio rerio
Gene Symbol: hdac10 Gene ID: 327253
Pocket Descriptors
Volume: 212.352 Depth: 14.191
Hydrophobicity: 0.717949 Drug Score: 0.282457
Pocket Similarity: Calculate
Ligand
Ligand Name:   N-hydroxy-4-{[3-(2-hydroxyethyl)-1H-indol-1-yl]methyl}benzamide
HET ID:   TWS PubChem:   146676960
DrugBank:   - ChEMBL:   -
Canonical SMILES:   OCCc1cn(c2c1cccc2)Cc1ccc(cc1)C(=O)NO
Standard InChI:   InChI=1S/C18H18N2O3/c21-10-9-15-12-20(17-4-2-1-3-16(15)17)11-13-5-7-14(8-6-13)18(22)19-23/h1-8,12,21,23H,9-11H2,(H,19,22)
Molecular Formula:   C18H18N2O3 Mol. Weight:   310.3471 Heavy Atoms:   23
Charge:   0 Is Chiral:   False logP:   2.7343
HBD:   3 HBA:   5 TPSA:   74.49
#Bonds:   25 #Rotatable Bonds:   6 Shape Complexity:   0.16666667
Stereocomplexity:   0.0 Ligand Type:   Small Molecule
Binding Affinity
-