Index	Protein Name	Organism	UniProt ID/ACC	#Protein-Ligand Complex(es)
1	14-3-3 protein sigma	Homo sapiens (Human)	P31947/1433S_HUMAN	11
2	2-hydroxymuconate tautomerase	Pseudomonas putida (Arthrobacter siderocapsulatus)	Q01468/4OT1_PSEPU	1
3	3C-like proteinase	Middle East respiratory syndrome-related coronavirus (MERS-CoV)	V9TU12/V9TU12_MERS	1
4	Albumin	Homo sapiens (Human)	P02768/ALBU_HUMAN	2
5	Aldehyde dehydrogenase, dimeric NADP-preferring	Homo sapiens (Human)	P30838/AL3A1_HUMAN	2
6	Aldehyde dehydrogenase, mitochondrial	Homo sapiens (Human)	P05091/ALDH2_HUMAN	1
7	Aminotransferase	Escherichia coli O44:H18 (strain 042 / EAEC)	D3H0F7/D3H0F7_ECO44	2
8	Baculoviral IAP repeat-containing protein 2	Homo sapiens (Human)	Q13490/BIRC2_HUMAN	1
9	Beta-lactamase	Bacillus licheniformis	P00808/BLAC_BACLI	12
10	Camphor 5-monooxygenase	Pseudomonas putida (Arthrobacter siderocapsulatus)	P00183/CPXA_PSEPU	2
11	Caspase-3	Homo sapiens (Human)	P42574/CASP3_HUMAN	19
12	Caspase-8	Homo sapiens (Human)	Q14790/CASP8_HUMAN	3
13	Cathepsin B1 isotype 1	Schistosoma mansoni (Blood fluke)	Q8MNY2/Q8MNY2_SCHMA	4
14	Cathepsin F	Homo sapiens (Human)	Q9UBX1/CATF_HUMAN	1
15	Cathepsin K	Homo sapiens (Human)	P43235/CATK_HUMAN	38
16	Cathepsin L2	Homo sapiens (Human)	O60911/CATL2_HUMAN	1
17	Cathepsin S	Homo sapiens (Human)	P25774/CATS_HUMAN	18
18	Coagulation factor XIII A chain	Homo sapiens (Human)	P00488/F13A_HUMAN	3
19	Cruzipain	Trypanosoma cruzi	P25779/CYSP_TRYCR	17
20	Cyclin-dependent kinase 2	Homo sapiens (Human)	P24941/CDK2_HUMAN	8
21	Cysteine protease	Trypanosoma brucei rhodesiense	Q95PM0/Q95PM0_TRYBR	2
22	Cytoplasmic tyrosine-protein kinase BMX	Homo sapiens (Human)	P51813/BMX_HUMAN	1
23	Dihydroorotate dehydrogenase (fumarate)	Trypanosoma cruzi (strain CL Brener)	Q4D3W2/PYRD_TRYCC	2
24	Dual specificity mitogen-activated protein kinase kinase 1	Homo sapiens (Human)	Q02750/MP2K1_HUMAN	1
25	Dual specificity mitogen-activated protein kinase kinase 7	Homo sapiens (Human)	O14733/MP2K7_HUMAN	8
26	E3 ubiquitin-protein ligase RNF31	Homo sapiens (Human)	Q96EP0/RNF31_HUMAN	6
27	Epidermal growth factor receptor	Homo sapiens (Human)	P00533/EGFR_HUMAN	15
28	Estrogen receptor	Homo sapiens (Human)	P03372/ESR1_HUMAN	2
29	Exportin-1	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	P30822/XPO1_YEAST	12
30	Ferritin light chain	Equus caballus (Horse)	P02791/FRIL_HORSE	3
31	Fibroblast growth factor receptor 1	Homo sapiens (Human)	P11362/FGFR1_HUMAN	5
32	Fibroblast growth factor receptor 4	Homo sapiens (Human)	P22455/FGFR4_HUMAN	14
33	Gag-Pol polyprotein	Human immunodeficiency virus type 1 group M subtype B (isolate BH10) (HIV-1)	P03366/POL_HV1B1	3
34	Genome polyprotein	Human enterovirus D68 (EV68) (EV-68)	A1E4A3/A1E4A3_HED68	7
35	Genome polyprotein	Human enterovirus 71 (EV71) (EV-71)	A9XG43/A9XG43_HE71	12
36	Genome polyprotein	Coxsackievirus A16	C8CIL7/C8CIL7_9ENTO	1
37	Genome polyprotein	Human enterovirus 71 (EV71) (EV-71)	E0WWC7/E0WWC7_HE71	1
38	Genome polyprotein	Human enterovirus 71 (EV71) (EV-71)	E7E815/E7E815_HE71	3
39	Genome polyprotein	Echovirus 1 (strain Human/Egypt/Farouk/1951) (E-1)	O91734/POLG_EC01F	1
40	Genome polyprotein	Coxsackievirus B3 (strain Nancy)	P03313/POLG_CXB3N	1
41	Genome polyprotein	Human rhinovirus 2 (HRV-2)	P04936/POLG_HRV2	1
42	Genome polyprotein	Hepatitis C virus genotype 1b (isolate BK) (HCV)	P26663/POLG_HCVBK	4
43	Genome polyprotein	Southampton virus (strain GI/Human/United Kingdom/Southampton/1991) (SHV) (Hu/NV/SHV/1991/UK)	Q04544/POLG_SOUV3	1
44	Genome polyprotein	Enterovirus B	Q5DSM6/Q5DSM6_9ENTO	2
45	Genome polyprotein	Coxsackievirus B3	Q5UEA2/Q5UEA2_9ENTO	9
46	Glutathione S-transferase omega-1	Homo sapiens (Human)	P78417/GSTO1_HUMAN	7
47	Glycogen synthase kinase-3 beta	Homo sapiens (Human)	P49841/GSK3B_HUMAN	1
48	GTPase HRas	Homo sapiens (Human)	P01112/RASH_HUMAN	9
49	GTPase KRas	Homo sapiens (Human)	P01116/RASK_HUMAN	43
50	GTPase KRas isoform X2	Erinaceus europaeus (Western European hedgehog)	A0A1S2ZE25/A0A1S2ZE25_ERIEU	1
51	Hemoglobin subunit alpha	Homo sapiens (Human)	P69905/HBA_HUMAN	12
52	Hemoglobin subunit beta	Homo sapiens (Human)	P68871/HBB_HUMAN	2
53	Histidine--tRNA ligase	Trypanosoma cruzi (strain CL Brener)	Q4DA54/Q4DA54_TRYCC	1
54	Isocitrate dehydrogenase [NADP] cytoplasmic	Homo sapiens (Human)	O75874/IDHC_HUMAN	4
55	Isocitrate lyase	Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)	P9WKK7/ACEA_MYCTU	1
56	Kelch-like ECH-associated protein 1	Homo sapiens (Human)	Q14145/KEAP1_HUMAN	3
57	L,D-transpeptidase 2	Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)	I6Y9J2/LDT2_MYCTU	15
58	Lysine-specific demethylase 5A	Homo sapiens (Human)	P29375/KDM5A_HUMAN	3
59	Lysine-specific demethylase 5B	Homo sapiens (Human)	Q9UGL1/KDM5B_HUMAN	1
60	Methionine aminopeptidase	Escherichia coli	C3TPN7/C3TPN7_ECOLX	1
61	Mitogen-activated protein kinase 1	Homo sapiens (Human)	P28482/MK01_HUMAN	5
62	Mitogen-activated protein kinase 1	Rattus norvegicus (Rat)	P63086/MK01_RAT	1
63	Mitogen-activated protein kinase 14	Homo sapiens (Human)	Q16539/MK14_HUMAN	2
64	Mitogen-activated protein kinase 3	Homo sapiens (Human)	P27361/MK03_HUMAN	1
65	N-lysine methyltransferase KMT5A	Homo sapiens (Human)	Q9NQR1/KMT5A_HUMAN	3
66	Nuclear receptor subfamily 4 group A member 2	Homo sapiens (Human)	P43354/NR4A2_HUMAN	2
67	O-GlcNAcase BT_4395	Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)	Q89ZI2/OGA_BACTN	4
68	Ornithine aminotransferase	Toxoplasma gondii (strain ATCC 50611 / Me49)	S8EY38/S8EY38_TOXGM	1
69	Papain	Carica papaya (Papaya)	P00784/PAPA1_CARPA	5
70	Peroxisome proliferator-activated receptor gamma	Homo sapiens (Human)	P37231/PPARG_HUMAN	14
71	Phosphate-binding protein PstS	Escherichia coli (strain K12)	P0AG82/PSTS_ECOLI	1
72	Proline racemase A	Trypanosoma cruzi (strain CL Brener)	Q4DA80/PRCMA_TRYCC	2
73	Protease	Human adenovirus D serotype 8 (HAdV-8) (Human adenovirus 8)	B9A5C1/B9A5C1_ADE08	4
74	Proteinaceous RNase P 1, chloroplastic/mitochondrial	Arabidopsis thaliana (Mouse-ear cress)	Q66GI4/PRRP1_ARATH	4
75	Protein S100-B	Bos taurus (Bovine)	P02638/S100B_BOVIN	2
76	Proto-oncogene tyrosine-protein kinase Src	Gallus gallus (Chicken)	P00523/SRC_CHICK	11
77	Pyridoxal 5'-phosphate synthase subunit PDX1.1	Arabidopsis thaliana (Mouse-ear cress)	O80448/PDX11_ARATH	1
78	Pyridoxal 5'-phosphate synthase subunit PDX1.3	Arabidopsis thaliana (Mouse-ear cress)	Q8L940/PDX13_ARATH	4
79	Queuine tRNA-ribosyltransferase	Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)	P28720/TGT_ZYMMO	1
80	RAC-alpha serine/threonine-protein kinase	Homo sapiens (Human)	P31749/AKT1_HUMAN	3
81	Replicase polyprotein 1a	Bat coronavirus HKU4 (BtCoV) (BtCoV/HKU4/2004)	P0C6T4/R1A_BCHK4	1
82	Replicase polyprotein 1a	Human coronavirus HKU1 (isolate N1) (HCoV-HKU1)	P0C6U3/R1A_CVHN1	1
83	Replicase polyprotein 1a	Severe acute respiratory syndrome coronavirus (SARS-CoV)	P0C6U8/R1A_SARS	10
84	Replicase polyprotein 1a	Avian infectious bronchitis virus (strain M41) (IBV)	P0C6V5/R1A_IBVM	1
85	Replicase polyprotein 1a	Porcine epidemic diarrhea virus (strain CV777) (PEDV)	P0C6V6/R1A_PEDV7	1
86	Replicase polyprotein 1ab	Feline coronavirus (strain FIPV WSU-79/1146) (FCoV)	Q98VG9/R1AB_FIPV	2
87	Replicase polyprotein 1ab	Severe acute respiratory syndrome coronavirus (SARS-CoV)	P0C6X7/R1AB_SARS	19
88	Replicase polyprotein 1ab	Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) (SARS-CoV-2)	P0DTD1/R1AB_SARS2	83
89	Ribosomal protein S6 kinase alpha-3	Mus musculus (Mouse)	P18654/KS6A3_MOUSE	1
90	Ribosomal protein S6 kinase alpha-3	Homo sapiens (Human)	P51812/KS6A3_HUMAN	2
91	SUMO-activating enzyme subunit 2	Homo sapiens (Human)	Q9UBT2/SAE2_HUMAN	1
92	T-box transcription factor T	Homo sapiens (Human)	O15178/TBXT_HUMAN	1
93	TGF-beta-activated kinase 1 and MAP3K7-binding protein 1	Homo sapiens (Human)	Q15750/M3K7_HUMAN	6
94	Thioredoxin	Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)	P9WG67/THIO_MYCTU	1
95	Thymidylate synthase	Lactobacillus casei	P00469/TYSY_LACCA	1
96	Thymidylate synthase	Pneumocystis carinii	P13100/TYSY_PNECA	1
97	Thymidylate synthase	Homo sapiens (Human)	P04818/TYSY_HUMAN	1
98	Thymidylate synthase	Mus musculus (Mouse)	P07607/TYSY_MOUSE	2
99	Thymidylate synthase	Escherichia coli (strain K12)	P0A884/TYSY_ECOLI	13
100	Thymidylate synthase	Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (Filobasidiella neoformans)	P0CS12/TYSY_CRYNJ	1
101	Transcriptional regulator, PadR-like family	Lactococcus lactis subsp. cremoris (strain MG1363)	A2RI36/A2RI36_LACLM	1
102	Transforming protein RhoA	Homo sapiens (Human)	P61586/RHOA_HUMAN	1
103	Transthyretin	Homo sapiens (Human)	P02766/TTHY_HUMAN	9
104	Tubulin alpha-1B chain	Bos taurus (Bovine)	P81947/TBA1B_BOVIN	1
105	Tubulin beta-2B chain	Bos taurus (Bovine)	Q6B856/TBB2B_BOVIN	5
106	Tubulinyl-Tyr carboxypeptidase 1	Homo sapiens (Human)	Q7L8A9/VASH1_HUMAN	2
107	Tyrosine-protein kinase BTK	Homo sapiens (Human)	Q06187/BTK_HUMAN	14
108	Tyrosine-protein kinase ITK/TSK	Homo sapiens (Human)	Q08881/ITK_HUMAN	4
109	Tyrosine-protein kinase JAK3	Homo sapiens (Human)	P52333/JAK3_HUMAN	9
110	Tyrosine-protein phosphatase YopH	Yersinia enterocolitica	P15273/YOPH_YEREN	2
111	Ubiquitin carboxyl-terminal hydrolase 7	Homo sapiens (Human)	Q93009/UBP7_HUMAN	1
112	Ubiquitin-conjugating enzyme E2 N	Homo sapiens (Human)	P61088/UBE2N_HUMAN	2
113	UPF0678 fatty acid-binding protein-like protein At1g79260	Arabidopsis thaliana (Mouse-ear cress)	O64527/Y1926_ARATH	1
114	Urease subunit alpha	Sporosarcina pasteurii (Bacillus pasteurii)	P41020/URE1_SPOPA	2
115	Vitamin D3 receptor	Rattus norvegicus (Rat)	P13053/VDR_RAT	2
116	Ypt/Rab-type GTPase YPT7	Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)	P32939/YPT7_YEAST	2