Index PDB ID Protein Name Organism UniProt ID Ligand Name Canonical SMILES HET Code 1 2QXH Kallikrein-7 Homo sapiens (Human) P49862 Suc-Ala-Ala-Pro-Phe-chloromethylketone C[C@H](NC(=O)CCC(O)=O)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc1ccccc1)C(=O)CCl K7J 2 2QXI Kallikrein-7 Homo sapiens (Human) P49862 Suc-Ala-Ala-Pro-Phe-chloromethylketone C[C@H](NC(=O)CCC(O)=O)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc1ccccc1)C(=O)CCl K7J 3 2QXJ Kallikrein-7 Homo sapiens (Human) P49862 Suc-Ala-Ala-Pro-Phe-chloromethylketone C[C@H](NC(=O)CCC(O)=O)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](Cc1ccccc1)C(=O)CCl K7J 4 6SHH Kallikrein-7 Homo sapiens (Human) P49862 3‐chlorophenyl 6‐(chloromethyl)coumarin‐3‐carboxylate ClCc(cc1)cc(c12)cc(c(o2)=O)C(=O)Oc3cccc(Cl)c3 SH7 5 6SJU Kallikrein-7 Homo sapiens (Human) P49862 3‐chlorophenyl 6‐(chloromethyl)coumarin‐3‐carboxylate ClCc(cc1)cc(c12)cc(c(o2)=O)C(=O)Oc3cccc(Cl)c3 LFW 6 5YKP Methionine aminopeptidase 1 Homo sapiens (Human) P53582 OVALICIN C[C@@]1(O)CCC(=O)[C@@H](OC)[C@]1(O)[C@@]2(C)O[C@@H]2CC=C(C)C OVA 7 5YR5 Methionine aminopeptidase 1 Homo sapiens (Human) P53582 OVALICIN C[C@@]1(O)CCC(=O)[C@@H](OC)[C@]1(O)[C@@]2(C)O[C@@H]2CC=C(C)C OVA 8 1B59 Methionine aminopeptidase 2 Homo sapiens (Human) P50579 OVALICIN C[C@@]1(O)CCC(=O)[C@@H](OC)[C@]1(O)[C@@]2(C)O[C@@H]2CC=C(C)C OVA 9 6VIM Mandelate racemase Pseudomonas putida (Arthrobacter siderocapsulatus) P11444 PHENYL BORONIC ACID OB(O)c1ccccc1 PBC 10 1BK9 Acidic phospholipase A2 Gloydius halys (Chinese water mocassin) (Agkistrodon halys) P14418 p-bromophenacyl bromide Brc1ccc(cc1)C(=O)CBr PBP 11 3HZW Basic phospholipase A2 homolog bothropstoxin-1 Bothrops jararacussu (Jararacussu) Q90249 p-bromophenacyl bromide Brc1ccc(cc1)C(=O)CBr PBP 12 3I03 Basic phospholipase A2 homolog bothropstoxin-1 Bothrops jararacussu (Jararacussu) Q90249 p-bromophenacyl bromide Brc1ccc(cc1)C(=O)CBr PBP 13 2OK9 Basic phospholipase A2 homolog piratoxin-1 Bothrops pirajai (Piraja's lancehead) P58399 p-bromophenacyl bromide Brc1ccc(cc1)C(=O)CBr PBP 14 1Z76 Acidic phospholipase A2 BthA-1 Bothrops jararacussu (Jararacussu) Q8AXY1 p-bromophenacyl bromide Brc1ccc(cc1)C(=O)CBr PBP 15 3A73 Albumin Homo sapiens (Human) P02768 delta12-prostaglandine J2 CCCCC[C@H](O)C\C=C1\[C@@H](C\C=C/CCCC(O)=O)C=CC1=O PJ2 16 6SHI Kallikrein-7 Homo sapiens (Human) P49862 3-bromophenyl 6-(chloromethyl)-2-oxo-2H-chromene-3-carboxylate ClCc(c1)ccc(c12)oc(=O)c(c2)C(=O)Oc3cccc(Br)c3 SH8 17 3ZEB Rhomboid protease GlpG Escherichia coli (strain K12) P09391 7-AMINO-3-(2-PHENYLETHOXY)-4-CHLOROISOCOUMARIN c1cc(N)cc(c12)c(=O)oc(c2Cl)OCCc3ccccc3 SV1 18 3CT4 PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK Lactococcus lactis subsp. lactis (strain IL1403) (Streptococcus lactis) Q9CIV8 Dihydroxyacetone OCC(=O)CO 2HA 19 5YR6 Methionine aminopeptidase 1 Homo sapiens (Human) P53582 TNP-470 CC(C)=CC[C@@H](O1)[C@@]1(C)[C@H]([C@]2(C)O)[C@H](OC)[C@@H](CC2)OC(=O)NC(=O)CCl TN4 20 1B6A Methionine aminopeptidase 2 Homo sapiens (Human) P50579 TNP-470 CC(C)=CC[C@@H](O1)[C@@]1(C)[C@H]([C@]2(C)O)[C@H](OC)[C@@H](CC2)OC(=O)NC(=O)CCl TN4 21 5YR4 Methionine aminopeptidase 1 Homo sapiens (Human) P53582 TNP-470 CC(C)=CC[C@@H](O1)[C@@]1(C)[C@H]([C@]2(C)O)[C@H](OC)[C@@H](CC2)OC(=O)NC(=O)CCl TN4 22 4HXF Peptidase_S9 domain-containing protein Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) O58323 N-[(benzyloxy)carbonyl]glycyl-N-[(2S,3R)-4-chloro-3-oxo-1-phenylbutan-2-yl]glycinamide c1ccccc1C[C@@H](C(=O)CCl)NC(=O)CNC(=O)CNC(=O)OCc2ccccc2 Y3A 23 4I4T Tubulin beta-2B chain Bos taurus (Bovine) Q6B856 (-)-ZAMPANOLIDE C/C=C/C=C\C(=O)N[C@@H](O)[C@H](C/C(C)=C/[C@@H]12)OC(=O)/C=C/C=C(/C)CC(=O)/C=C/C[C@H](O1)CC(C2)=C ZPN 24 5NG1 Tubulin beta-2B chain Bos taurus (Bovine) Q6B856 (-)-ZAMPANOLIDE C/C=C/C=C\C(=O)N[C@@H](O)[C@H](C/C(C)=C/[C@@H]12)OC(=O)/C=C/C=C(/C)CC(=O)/C=C/C[C@H](O1)CC(C2)=C ZPN 25 4CH8 Prothrombin Homo sapiens (Human) P00734 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-oxohexan-3-yl]-L-prolinamide N[C@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(N)=N)C(=O)CCl 0G6 26 6PX5 Prothrombin Homo sapiens (Human) P00734 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-oxohexan-3-yl]-L-prolinamide N[C@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(N)=N)C(=O)CCl 0G6 27 2FIR Coagulation factor VII Homo sapiens (Human) P08709 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-oxohexan-3-yl]-L-prolinamide N[C@H](Cc1ccccc1)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCCNC(N)=N)C(=O)CCl 0G7 28 1DX5 Prothrombin Homo sapiens (Human) P00734 L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-oxoethyl]butyl}glycinamide N[C@@H](CCC(O)=O)C(=O)NCC(=O)N[C@@H](CCCNC(N)=N)C(=O)CCl 0GJ 29 2XF2 Catalase Penicillium janthinellum (Penicillium vitale) D9N167 3-AMINO-s-Triazole Nc1nc[nH]n1 3TR 30 5CLS Methionine aminopeptidase 2 Homo sapiens (Human) P50579 (4R,7R)-3-[(4-methoxyphenyl)methyl]-3,5,6,7-tetrahydrospiro[1,2,3-benzotriazole-4,2'-oxiran]-7-yl N-(propan-2-yl)carbamate COc1ccc(cc1)Cn2nnc(c2[C@]34CO3)[C@@H](CC4)OC(=O)NC(C)C 52T 31 5D6F Methionine aminopeptidase 2 Homo sapiens (Human) P50579 (4R,7S)-3-[(4-methoxyphenyl)methyl]-3,5,6,7-tetrahydrospiro[1,2,3-benzotriazole-4,2'-oxiran]-7-yl N-(propan-2-yl)carbamate COc1ccc(cc1)Cn2nnc(c2[C@]34CO3)[C@H](CC4)OC(=O)NC(C)C 57R 32 4DWQ RNA-splicing ligase RtcB Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) O59245 GUANOSINE-5'-MONOPHOSPHATE Nc1nc2n(cnc2c(=O)[nH]1)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O 5GP 33 5NG1 Tubulin beta-2B chain Bos taurus (Bovine) Q6B856 (-)-Hexahydro-zampanolide C/C=C/C=C\C(=O)N[C@@H](O)[C@@H](C/C(C)=C/[C@H]12)OC(=O)/C=C/C=C(/C)CC(=O)/C=C/C[C@@H](O1)CC(C2)=C 8WE 34 5ZWF Vitamin D3 receptor Rattus norvegicus (Rat) P13053 7-[(1R,3R,7E,17beta)-1,3-Dihydroxy-2-methylidene-9,10-secoestra-5,7-dien-17-yl]-oct-2-en-4-one C/C=C/C(=O)CC[C@@H](C)[C@H]1CC[C@H]([C@@]12C)/C(CCC2)=C/C=C3\C[C@@H](O)C(=C)[C@H](O)C3 9KR 35 5ZWH Vitamin D3 receptor Rattus norvegicus (Rat) P13053 2-[(1R,3R,7E,17beta)-1,3-Dihydroxy-2-methylidene-9,10-secoestra-5,7-dien-17-yl]-oct-6-en-4-yn-3-one C/C=C/C#CC(=O)[C@@H](C)[C@H]1CC[C@H]([C@@]12C)/C(CCC2)=C/C=C3\C[C@@H](O)C(=C)[C@H](O)C3 9KX 36 6Q7N Glyceraldehyde 3-phosphate phosphatase Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) O58216 2-bromoacetophenone BrCC(=O)c1ccccc1 AC0 37 8RSA Ribonuclease pancreatic Bos taurus (Bovine) P61823 3'-DEOXY-3'-BROMOACETAMIDO-THYMIDINE O=c1[nH]c(=O)n(cc1C)[C@H]2C[C@H](NC(=O)CBr)[C@H](O2)CO ADT 38 1RAR Ribonuclease pancreatic Bos taurus (Bovine) P61823 1,5-IAENS OS(=O)(=O)c1cccc2c(NCCNC(=O)CI)cccc12 AEN 39 1RAS Ribonuclease pancreatic Bos taurus (Bovine) P61823 1,5-IAENS OS(=O)(=O)c1cccc2c(NCCNC(=O)CI)cccc12 AEN 40 1HNE Neutrophil elastase Homo sapiens (Human) P08246 methoxysuccinyl-alanyl-alanyl-prolyl-alanine chloromethyl ketone COC(=O)CCC(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C)C(=O)CCl MSU 41 2RDL Chymase 2 Mesocricetus auratus (Golden hamster) O70164 methoxysuccinyl-alanyl-alanyl-prolyl-alanine chloromethyl ketone COC(=O)CCC(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C)C(=O)CCl ALV 42 3PRK Proteinase K Parengyodontium album (Tritirachium album) P06873 methoxysuccinyl-alanyl-alanyl-prolyl-alanine chloromethyl ketone COC(=O)CCC(=O)N[C@@H](C)C(=O)N[C@@H](C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](C)C(=O)CCl MSU 43 3KGD RNA 3'-terminal phosphate cyclase Escherichia coli (strain K12) P46849 ADENOSINE MONOPHOSPHATE Nc1ncnc2n(cnc12)[C@@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O AMP 44 2CXV Genome polyprotein Human hepatitis A virus genotype IB (isolate MBB) (HHAV) (Human hepatitis A virus (isolate Human/Northern Africa/MBB/1978)) P13901 N-benzyloxycarbonyl-l-serine-beta-lactone O=C1OC[C@@H]1NC(=O)OCc2ccccc2 BBL 45 2A4O Genome polyprotein Human hepatitis A virus genotype IB (isolate MBB) (HHAV) (Human hepatitis A virus (isolate Human/Northern Africa/MBB/1978)) P13901 N-benzyloxycarbonyl-l-serine-beta-lactone O=C1OC[C@@H]1NC(=O)OCc2ccccc2 BBL 46 2HAL Genome polyprotein Human hepatitis A virus genotype IB (isolate HM175) (HHAV) (Human hepatitis A virus (isolate Human/Australia/HM175/1976)) P08617 N-benzyloxycarbonyl-l-serine-beta-lactone O=C1OC[C@@H]1NC(=O)OCc2ccccc2 BBL 47 2H6M Genome polyprotein Human hepatitis A virus genotype IB (isolate HM175) (HHAV) (Human hepatitis A virus (isolate Human/Australia/HM175/1976)) P08617 N-benzyloxycarbonyl-l-serine-beta-lactone O=C1OC[C@@H]1NC(=O)OCc2ccccc2 BBL 48 2H9H Genome polyprotein Human hepatitis A virus genotype IB (isolate HM175) (HHAV) (Human hepatitis A virus (isolate Human/Australia/HM175/1976)) P08617 N-benzyloxycarbonyl-l-serine-beta-lactone O=C1OC[C@@H]1NC(=O)OCc2ccccc2 BBL 49 1ARC Protease 1 Achromobacter lyticus P15636 TLCK Cc1ccc(cc1)S(=O)(=O)N[C@@H](CCCCN)C(=O)CCl TCK 50 3E6P Prothrombin Homo sapiens (Human) P00734 D-PHENYLALANYL-N-[(1S)-4-{[(Z)-AMINO(IMINO)METHYL]AMINO}-1-(CHLOROACETYL)BUTYL]-L-PROLINAMIDE N[C@H](Cc1ccccc1)C(=O)N([C@@H](CCCNC(N)=N)C(=O)CCl)C(=O)[C@@H]1CCCN1 DFK 51 9XIA Xylose isomerase Streptomyces rubiginosus P24300 (E)-3-deoxy-3-(fluoromethylidene)-D-glucose OC[C@@H](O)[C@@H](O)C(=C/F)\[C@@H](O)C=O DFR 52 6BL1 Isocitrate dehydrogenase [NADP] cytoplasmic Homo sapiens (Human) O75874 (6aS,7S,10aR)-7-methyl-8-oxo-10a-phenyl-2-(phenylamino)-5H,6H,6aH,7H,8H,10aH-cyclohexa[h]quinazoline-9-carbonitrile c1ccccc1[C@@]23[C@H]([C@H](C)C(=O)C(=C2)C#N)CCc4c3nc(nc4)Nc5ccccc5 DWG 53 6BL0 Isocitrate dehydrogenase [NADP] cytoplasmic Homo sapiens (Human) O75874 (5aS,6S,9aR)-2-benzoyl-6-methyl-7-oxo-9a-phenyl-2H,4H,5H,5aH,6H,7H,9aH-cyclohexa[g]indazole-8-carbonitrile c1ccccc1[C@@]23[C@H]([C@H](C)C(=O)C(=C2)C#N)CCc4c3nn(c4)C(=O)c5ccccc5 DWJ 54 6BKX Isocitrate dehydrogenase [NADP] cytoplasmic Homo sapiens (Human) O75874 (6aS,7S,10aR)-7,10a-dimethyl-8-oxo-2-(phenylamino)-5H,6H,6aH,7H,8H,10aH-cyclohexa[h]quinazoline-9-carbonitrile N#CC(=C1)C(=O)[C@@H](C)[C@@H]([C@]12C)CCc3c2nc(nc3)Nc4ccccc4 DWP 55 6BL2 Isocitrate dehydrogenase [NADP] cytoplasmic Homo sapiens (Human) O75874 3-[(6aS,7S,10aR)-9-cyano-7-methyl-8-oxo-2-(phenylamino)-5H,6H,6aH,7H,8H,10aH-cyclohexa[h]quinazolin-10a-yl]benzoic acid C[C@H]1[C@@H]2CCc3cnc(Nc4ccccc4)nc3[C@]2(C=C(C#N)C1=O)c1cccc(c1)C(O)=O DWS 56 5XPS Transketolase Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (Yeast) (Pichia stipitis) P34736 erythrose-4-phosphate O[C@H](COP(O)(O)=O)[C@@H](O)C=O E4P 57 6CGE 17-beta-hydroxysteroid dehydrogenase type 1 Homo sapiens (Human) P14061 PBRM BrCCc(cc1)cc(CC2)c1[C@@H](CC3)[C@@H]2[C@@H]([C@]34C)C[C@@H]([C@@H]4O)Cc5cccc(c5)C(=O)N F0D 58 1BOA Methionine aminopeptidase 2 Homo sapiens (Human) P50579 FUMAGILLIN CC(C)=CC[C@@H](O1)[C@@]1(C)[C@H]([C@@]23CO3)[C@H](OC)[C@@H](CC2)OC(=O)/C=C/C=C/C=C/C=C/C([O-])=O FUG 59 1UOD PEP-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK Escherichia coli (strain K12) P76015 dihydroxyacetonephosphate OCC(=O)COP(O)(O)=O G3H 60 1V0Y Phospholipase D Streptomyces sp. (strain PMF) P84147 dibutyrylphosphatidylcholine CCCC(=O)OC[C@H](COP(O)(=O)OCC[N+](C)(C)C)OC(=O)CCC HI5 61 2GMT Chymotrypsinogen A Bos taurus (Bovine) P00766 (2S) N-ACETYL-L-ALANYL-L-PHENYLALANYL-CHLOROETHYL KETONE CC(=O)N[C@@H](C)C(=O)N[C@H](C(=O)[C@H](Cl)C)Cc1ccccc1 HIN 62 9EST Chymotrypsin-like elastase family member 1 Sus scrofa (Pig) P00772 7-AMINO-3-(2-BROMOETHOXY)-4-CHLOROISOCOURMARIN c1cc(N)cc(c12)c(=O)oc(c2Cl)OCCBr IBR 63 6QTN Tubulin beta-2B chain Bos taurus (Bovine) Q6B856 Cyclostreptin O=C1O[C@H](CC2)[C@@H](C)C(O3)=C1[C@@H]([C@H]4[C@@]23C)[C@H]5[C@H]6[C@H](C=C(C)[C@H]5C4)[C@H](O)[C@@H](C)[C@@H]6O JHH